STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfkRiboflavin kinase. (185 aa)    
Predicted Functional Partners:
flad1
Flavin adenine dinucleotide synthetase 1.
    
 0.994
acp5
Tartrate-resistant acid phosphatase type 5.
  
 
 0.924
iyd
Iodotyrosine deiodinase.
    
 0.922
blvrb
Biliverdin reductase B.
    
 0.910
LOC103457410
Ectonucleotide pyrophosphatase/phosphodiesterase 1.
  
 
  0.901
LOC103472797
Uncharacterized protein.
  
 
  0.901
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 
  0.870
fdx1
2Fe-2S ferredoxin-type domain-containing protein.
     
 0.857
fdx2
Ferredoxin 2.
     
 0.857
amacr
Alpha-methylacyl-CoA racemase.
   
 
  0.850
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.