STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldb1LIM domain binding 1a. (373 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.899
lmo3
LIM domain only 3.
    
 0.829
LOC103462448
LIM domain only 1.
    
 0.829
Tal1
BHLH domain-containing protein.
    
 0.824
LOC103479412
T-cell acute lymphocytic leukemia 1.
    
 0.824
isl2
ISL LIM homeobox 2a.
    
 0.701
LOC103469637
ISL LIM homeobox 1.
    
 0.701
lhx9
LIM homeobox 9.
    
 0.675
lhx2
LIM homeobox 2b.
    
 0.675
ENSPREP00000032096
LIM zinc-binding domain-containing protein.
    
 0.675
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.