STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpgrip1lRPGRIP1 like. (1044 aa)    
Predicted Functional Partners:
nphp4
Uncharacterized protein.
    
 0.919
ENSPREP00000015938
Nephronophthisis 4.
    
 0.919
nphp1
Nephronophthisis 1.
    
 0.910
rpgr
Uncharacterized protein.
    
 
 0.759
cc2d2a
Coiled-coil and C2 domain containing 2A.
   
  
 0.698
CIB2
Calcium and integrin binding family member 2.
    
 
 0.687
LOC103466575
Calcium and integrin binding family member 2.
    
 
 0.687
tmem67
Transmembrane protein 67.
   
  
 0.669
tmem231
Transmembrane protein 231.
      
 0.636
ENSPREP00000022685
Abelson helper integration site 1.
    
 0.630
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.