STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ambra1Autophagy/beclin-1 regulator 1b. (1210 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.939
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
   
 
 0.874
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
   
 0.866
atg14
Autophagy related 14.
     
 0.833
ddb1
Damage-specific DNA binding protein 1.
    
 0.833
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
   
 0.829
atg101
Autophagy related 101.
    
 0.778
Unc79
Uncharacterized protein.
    
 0.768
rb1cc1
RB1-inducible coiled-coil 1.
    
 0.763
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.706
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.