STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxd3Forkhead box D3. (363 aa)    
Predicted Functional Partners:
sox10
SRY-box transcription factor 10.
   
 0.711
LOC103479789
SRY-box transcription factor 1a.
   
 0.683
brpf1
Uncharacterized protein.
      
 0.619
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.608
LOC103463937
LIM domain containing preferred translocation partner in lipoma.
      
 0.605
kctd12
Potassium channel tetramerisation domain containing 12.1.
      
 0.595
ENSPREP00000032361
BTB domain-containing protein.
      
 0.595
LOC103465526
Melanocyte inducing transcription factor a.
    
 
 0.578
SNAI2
Snail family transcriptional repressor 2.
   
  
 0.530
zic1
Zic family member 1 (odd-paired homolog, Drosophila).
   
 0.522
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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