STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpy19l1Dpy-19-like 1, like (H. sapiens). (730 aa)    
Predicted Functional Partners:
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.646
tsr1
TSR1 ribosome maturation factor.
      
 0.643
tsr2
TSR2 ribosome maturation factor.
      
 0.630
casc1
Cancer susceptibility candidate 1.
   
    0.588
unc5a
Unc-5 netrin receptor A.
    
 
 0.568
LOC103478373
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
      
 0.560
ENSPREP00000025676
Coiled-coil domain containing 62.
      
 0.559
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
      
 0.549
pick1
Protein interacting with prkca 1.
      
 0.549
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
  
 0.517
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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