STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting 13 homolog B. (3878 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 
 0.575
pgk1
Phosphoglycerate kinase.
      
 0.549
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.501
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
   
  
 0.481
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.480
vps13d
Vacuolar protein sorting 13 homolog D.
   
  
0.467
spg11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.445
farsb
Phenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family.
      
 0.443
coasy
CoA synthase.
      
 0.440
rnf166
Ring finger protein 166.
      
 0.440
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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