STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469783T-box transcription factor 16. (461 aa)    
Predicted Functional Partners:
LOC103457498
Mesogenin 1.
   
 0.620
LOC103462739
Mesoderm posterior aa.
    
 0.574
LOC103466191
Solute carrier family 41 member 2a.
      
 0.538
LOC103465076
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a.
      
 0.523
arhgap35
Uncharacterized protein.
      
 0.523
LOC103458174
Notochord homeobox.
   
 
 0.444
LOC103471993
T-box transcription factor Ta.
  
 
0.417
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.416
wnt3
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.416
LOC103470287
Southpaw.
  
  
 0.401
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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