STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472755Zinc finger protein 219. (1223 aa)    
Predicted Functional Partners:
LOC103472754
Rho guanine nucleotide exchange factor (GEF) 40.
 
   
 0.570
LOC103470961
Matrin-type domain-containing protein.
  
 
  0.534
LOC103463292
Usher syndrome 1C binding protein 1.
  
 
   0.528
ENSPREP00000030955
Bloodthirsty-related gene family, member 12.
   
 0.520
LOC103477155
Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.
  
     0.470
ENSPREP00000006572
Uncharacterized protein.
    
 
 0.465
ZNF521
Zinc finger protein 521.
    
 
 0.465
nacad
NAC alpha domain containing.
  
     0.424
erich1
Uncharacterized protein.
  
     0.421
bclaf3
Uncharacterized protein.
  
     0.413
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.