STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp12Ribosomal RNA processing 12 homolog. (1289 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 
 0.998
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.997
LOC103473717
PWP2 small subunit processome component.
   
 
 0.996
noc4l
Nucleolar complex associated 4 homolog.
   
 
 0.995
tsr1
TSR1 ribosome maturation factor.
   
 
 0.995
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.993
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.993
rbm28
RNA binding motif protein 28.
   
 
 0.983
wdr43
WD repeat domain 43.
   
   0.982
LOC103482453
UTP14C small subunit processome component.
   
 
 0.978
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.