STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103481194Transmembrane O-mannosyltransferase targeting cadherins 2b. (652 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.885
ints1
Integrator complex subunit 1.
    
 0.756
ints13
Integrator complex subunit 13.
   
 0.727
ints5
Integrator complex subunit 5.
    
 0.716
ints3
Integrator complex subunit 3.
    
 0.716
ints10
Integrator complex subunit 10.
   
 0.701
ints9
Integrator complex subunit 9.
   
 0.641
ints11
Integrator complex subunit 11.
   
 0.631
tep1
Uncharacterized protein.
   
 0.627
bbs9
Bardet-Biedl syndrome 9.
    
 0.626
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.