STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473376Torsin. (329 aa)    
Predicted Functional Partners:
LOC103463578
Uncharacterized protein.
   
 
 0.676
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.641
cops5
COP9 signalosome subunit 5.
     
 0.627
cops2
COP9 signalosome subunit 2.
   
 
  0.621
ENSPREP00000020872
Uncharacterized protein.
   
 
  0.610
COPS6
COP9 signalosome subunit 6.
   
 
  0.608
ENSPREP00000016012
Uncharacterized protein.
   
 
 0.587
cnn3
Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.
      
 0.470
LOC103465828
PNPLA domain-containing protein.
      
 0.470
LOC103471590
Teleost multiple tissue opsin 3a; Belongs to the G-protein coupled receptor 1 family.
      
 0.470
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.