STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A28Solute carrier family 25 member 28; Belongs to the mitochondrial carrier (TC 2.A.29) family. (397 aa)    
Predicted Functional Partners:
nars2
Asparaginyl-tRNA synthetase 2, mitochondrial.
 
      0.869
fxn
Frataxin.
    
 
 0.580
iscu
Iron-sulfur cluster assembly enzyme; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
   
  
 0.481
mrpl4
Mitochondrial ribosomal protein L4.
    
 
 0.478
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
    
 
 0.477
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.473
Mrs2
Magnesium transporter.
    
 
 0.446
abcb10
ATP-binding cassette, sub-family B (MDR/TAP), member 10.
   
 
 0.434
arih1
RBR-type E3 ubiquitin transferase.
 
      0.431
nfs1
NFS1 cysteine desulfurase.
      
 0.410
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.