STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfrsf18CD40 molecule, TNF receptor superfamily member 5. (314 aa)    
Predicted Functional Partners:
LOC103471589
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.979
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.960
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.960
tnfsf11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.806
LOC103469572
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.764
LOC103473816
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.764
LOC103473320
TNF receptor-associated factor.
   
 0.764
tnfsf13b
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 0.708
aicda
Activation-induced cytidine deaminase.
   
  
 0.704
LOC103462560
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.693
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.