LOC103466206 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103466206

Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2795 aa)

Predicted Functional Partners:

LOC103465321

0.540

LOC103472282

0.540

ctnnb1

0.540

LOC103465658

0.467

pcdh15

0.467

LOC103481331

0.467

LOC103457508

0.463

LOC103471147

0.462

ctnna2

0.462

ENSPREP00000028495

0.462

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000028495	LOC103457508	ENSPREP00000028495	ENSPREP00000032713	Uncharacterized protein.	Plakophilin 4.	0.670
ENSPREP00000028495	LOC103465321	ENSPREP00000028495	ENSPREP00000000600	Uncharacterized protein.	Junction plakoglobin a.	0.795
ENSPREP00000028495	LOC103465658	ENSPREP00000028495	ENSPREP00000002030	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSPREP00000028495	LOC103466206	ENSPREP00000028495	ENSPREP00000031371	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.462
ENSPREP00000028495	LOC103471147	ENSPREP00000028495	ENSPREP00000009514	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha 1.	0.928
ENSPREP00000028495	LOC103472282	ENSPREP00000028495	ENSPREP00000005903	Uncharacterized protein.	Uncharacterized protein.	0.793
ENSPREP00000028495	LOC103481331	ENSPREP00000028495	ENSPREP00000033674	Uncharacterized protein.	Uncharacterized protein.	0.428
ENSPREP00000028495	ctnnb1	ENSPREP00000028495	ENSPREP00000019419	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.850
ENSPREP00000028495	pcdh15	ENSPREP00000028495	ENSPREP00000022296	Uncharacterized protein.	Protocadherin-related 15a.	0.428
LOC103457508	ENSPREP00000028495	ENSPREP00000032713	ENSPREP00000028495	Plakophilin 4.	Uncharacterized protein.	0.670
LOC103457508	LOC103465321	ENSPREP00000032713	ENSPREP00000000600	Plakophilin 4.	Junction plakoglobin a.	0.635
LOC103457508	LOC103465658	ENSPREP00000032713	ENSPREP00000002030	Plakophilin 4.	Uncharacterized protein.	0.414
LOC103457508	LOC103466206	ENSPREP00000032713	ENSPREP00000031371	Plakophilin 4.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.463
LOC103457508	LOC103471147	ENSPREP00000032713	ENSPREP00000009514	Plakophilin 4.	Catenin (cadherin-associated protein), alpha 1.	0.670
LOC103457508	LOC103472282	ENSPREP00000032713	ENSPREP00000005903	Plakophilin 4.	Uncharacterized protein.	0.635
LOC103457508	LOC103481331	ENSPREP00000032713	ENSPREP00000033674	Plakophilin 4.	Uncharacterized protein.	0.414
LOC103457508	ctnna2	ENSPREP00000032713	ENSPREP00000013533	Plakophilin 4.	Catenin (cadherin-associated protein), alpha 2.	0.670
LOC103457508	ctnnb1	ENSPREP00000032713	ENSPREP00000019419	Plakophilin 4.	Catenin (cadherin-associated protein), beta 1.	0.635
LOC103457508	pcdh15	ENSPREP00000032713	ENSPREP00000022296	Plakophilin 4.	Protocadherin-related 15a.	0.414
LOC103465321	ENSPREP00000028495	ENSPREP00000000600	ENSPREP00000028495	Junction plakoglobin a.	Uncharacterized protein.	0.795