STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clg9h12orf65Si:ch211-275j6.5. (169 aa)    
Predicted Functional Partners:
ENSPREP00000027804
RF_PROK_I domain-containing protein.
   
 
 0.899
hemk1
HemK methyltransferase family member 1.
  
 
 0.825
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
 
 0.825
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.797
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.796
mrpl9
Mitochondrial ribosomal protein L9.
   
 
 0.786
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.779
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.772
mrps16
Mitochondrial ribosomal protein S16.
  
 
 0.769
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.767
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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