STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475726Reticulon. (207 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.504
LOC103458439
Receptor expression-enhancing protein.
    
 
 0.500
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.483
stx5
Syntaxin 5A; Belongs to the syntaxin family.
      
 0.479
atl1
Atlastin GTPase 1.
    
 
 0.479
LOC103481546
GTP cyclohydrolase 2.
    
   0.433
gch1
GTP cyclohydrolase 1.
    
   0.433
LOC103471655
Atlastin 3.
    
 
 0.422
LOC103476688
Atlastin GTPase 2.
    
 
 0.414
snx15
Sorting nexin 15.
    
   0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.