STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sucoSUN domain containing ossification factor. (1435 aa)    
Predicted Functional Partners:
tapt1
Transmembrane anterior posterior transformation 1b.
    
   0.515
LOC103471856
Transmembrane anterior posterior transformation 1a.
    
   0.515
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.478
ENSPREP00000026853
Tubulin tyrosine ligase-like family, member 2.
      
 0.471
sun2
SUN domain-containing protein.
    
 
 0.401
sun1
Sad1 and UNC84 domain containing 1.
    
 
 0.401
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.