STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frem1Fras1 related extracellular matrix 1a. (2163 aa)    
Predicted Functional Partners:
LOC103474980
FRAS1 related extracellular matrix 2b.
  
0.940
frem2
FRAS1 related extracellular matrix 2a.
   
0.921
Fras1
Uncharacterized protein.
 
 
 0.919
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 
 0.905
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.901
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
    
  0.901
npnt
Nephronectin a.
    
 0.830
LOC103480945
Uncharacterized protein.
     
  0.800
sema3g
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.
     
 0.702
epha7
Eph receptor A7.
      
 0.630
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.