STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000031541Ring finger protein 123. (397 aa)    
Predicted Functional Partners:
Rnf123
B30.2/SPRY domain-containing protein.
 
     0.941
ubac1
UBA domain containing 1.
   
 
 0.749
usp19
Ubiquitin specific peptidase 19.
   
 0.631
usp11
Ubiquitin specific peptidase 11; Belongs to the peptidase C19 family.
   
 0.595
LOC108166442
DUSP domain-containing protein.
   
 0.595
USP15
Ubiquitin carboxyl-terminal hydrolase.
   
 0.448
usp4
Ubiquitin carboxyl-terminal hydrolase.
   
 0.448
LOC103468872
Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family.
   
 0.438
LOC103468397
Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family.
   
 0.438
usp32
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
   
 0.438
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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