STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103482020Retinol binding protein 3. (617 aa)    
Predicted Functional Partners:
ENSPREP00000011325
CLa domain-containing protein.
   
  
 0.665
LOC103479821
Clusterin; Belongs to the clusterin family.
   
  
 0.665
LOC103467179
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.640
LOC103464572
Rhodopsin.
   
  
 0.485
LOC103464571
Rhodopsin.
   
  
 0.485
RHO
Extra-ocular rhodopsin.
   
  
 0.485
rho
Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).
   
  
 0.485
rbp5
Retinol binding protein 1a, cellular; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.470
clu
Clusterin; Belongs to the clusterin family.
   
  
 0.452
LOC103476853
Retinal G protein coupled receptor a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
   
  
 0.435
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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