STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col8a2Collagen, type VIII, alpha 2. (685 aa)    
Predicted Functional Partners:
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.681
LOC103458742
Tyrosine-protein kinase.
    
 0.578
abhd10
Transgelin 3b.
      
 0.550
ENSPREP00000013925
Uncharacterized protein.
  
     0.498
LOC108166264
Uncharacterized protein.
 
  
0.473
LOC103464342
Complement C1q C chain.
  
 
0.454
LOC103477666
Collagen, type VIII, alpha 1b.
  
  
 
0.435
COL8A1
Collagen type VIII alpha 1 chain.
  
  
 
0.433
tep1
Uncharacterized protein.
    
 0.427
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
   
  0.411
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.