STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nicn1Nicolin 1. (217 aa)    
Predicted Functional Partners:
tpgs2
Tubulin polyglutamylase complex subunit 2.
    
 0.823
LRRC49
Leucine rich repeat containing 49.
   
 0.822
tpgs1
Uncharacterized protein.
    
 0.817
ttll1
Tubulin tyrosine ligase-like family, member 1.
   
 0.804
ttl
Tubulin tyrosine ligase.
   
 0.652
pex13
Si:ch211-189k9.2.
    
   0.642
tbc1d19
TBC1 domain family, member 19.
    
   0.642
clg6h11orf49
Zgc:92873.
    
   0.615
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
 
 
  
 0.588
tmem178a
Transmembrane protein 178.
      
 0.477
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.