STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp39Ubiquitin specific peptidase 39. (495 aa)    
Predicted Functional Partners:
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.972
snrnp27
SNRNP27 domain-containing protein.
   
 0.958
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.955
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.950
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.949
ENSPREP00000012415
EFG_C domain-containing protein.
   
 0.949
prpf8
Pre-mRNA processing factor 8.
   
 0.948
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.927
Prpf4
WD_REPEATS_REGION domain-containing protein.
    
 0.927
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.927
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.