STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr48WD repeat domain 48b. (338 aa)    
Predicted Functional Partners:
usp1
Ubiquitin carboxyl-terminal hydrolase.
   
 0.976
fanci
FA complementation group I.
    
 0.937
Wdr48
WD_REPEATS_REGION domain-containing protein.
 
     0.918
wdr20
WD repeat domain 20a.
    
 0.886
LOC103475215
DM1 locus, WD repeat containing.
    
 0.886
rps27a
Ribosomal protein S27a.
    
 0.883
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.878
LOC103480258
Ubiquitin carboxyl-terminal hydrolase.
   
 0.856
usp46
Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family.
   
 0.856
usp12
Ubiquitin specific peptidase 12a; Belongs to the peptidase C19 family.
   
 0.856
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.