STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxa13Homeobox A13a. (302 aa)    
Predicted Functional Partners:
nucks1
Nuclear casein kinase and cyclin-dependent kinase substrate 1a.
   
  
 0.516
CDH7
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.503
TNFRSF11B
TNF receptor superfamily member 11b.
      
 0.503
hspg2
Heparan sulfate proteoglycan 2.
      
 0.503
MCOLN3
Mucolipin 3.
      
 0.476
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
    
 
 0.426
pax1
Paired box 1a.
    
 
 0.419
comp
Cartilage oligomeric matrix protein.
      
 0.408
bnc2
Basonuclin 2.
      
 0.408
ENSPREP00000005251
POC5 centriolar protein homolog (Chlamydomonas).
      
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.