STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxa5Homeobox A5a. (283 aa)    
Predicted Functional Partners:
nfatc2
Nuclear factor of activated T cells 2a.
      
 0.647
hoxa3
Homeobox A4a.
   
  
0.613
hoxb3
Homeobox domain-containing protein.
   
  
0.604
LOC103468208
Homeobox domain-containing protein.
  
   
0.477
hoxb5
Homeobox B5b.
  
   
0.476
LOC103468209
Homeobox B4a.
  
 
0.471
LOC103463647
Forkhead box Q2.
    
 0.446
FOXC1
Forkhead box C1.
    
 0.446
ENSPREP00000014932
Forkhead box C1.
    
 0.446
Nfia
CTF/NF-I domain-containing protein.
    
 
 0.445
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.