gfi1b protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gfi1b

Growth factor independent 1B transcription repressor. (330 aa)

Predicted Functional Partners:

rnf151

0.557

LOC103478666

0.557

LOC103466339

0.548

LOC103473675

0.531

alad

0.530

metap2

0.527

LOC103479412

0.514

lmo2

0.491

LOC103476519

0.486

rhag

0.456

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103466339	LOC103473675	ENSPREP00000006144	ENSPREP00000015035	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	5'-nucleotidase, cytosolic II, like 1.	0.647
LOC103466339	LOC103476519	ENSPREP00000006144	ENSPREP00000029915	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	T cell leukemia homeobox 1.	0.642
LOC103466339	LOC103478666	ENSPREP00000006144	ENSPREP00000027238	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	Ring finger protein 41, like.	0.685
LOC103466339	alad	ENSPREP00000006144	ENSPREP00000030021	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	Uncharacterized protein; Belongs to the ALAD family.	0.407
LOC103466339	gfi1b	ENSPREP00000006144	ENSPREP00000032060	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	Growth factor independent 1B transcription repressor.	0.548
LOC103466339	rnf151	ENSPREP00000006144	ENSPREP00000008283	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	Ring finger protein 151.	0.702
LOC103473675	LOC103466339	ENSPREP00000015035	ENSPREP00000006144	5'-nucleotidase, cytosolic II, like 1.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.647
LOC103473675	LOC103476519	ENSPREP00000015035	ENSPREP00000029915	5'-nucleotidase, cytosolic II, like 1.	T cell leukemia homeobox 1.	0.636
LOC103473675	LOC103478666	ENSPREP00000015035	ENSPREP00000027238	5'-nucleotidase, cytosolic II, like 1.	Ring finger protein 41, like.	0.647
LOC103473675	gfi1b	ENSPREP00000015035	ENSPREP00000032060	5'-nucleotidase, cytosolic II, like 1.	Growth factor independent 1B transcription repressor.	0.531
LOC103473675	metap2	ENSPREP00000015035	ENSPREP00000033438	5'-nucleotidase, cytosolic II, like 1.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.646
LOC103473675	rnf151	ENSPREP00000015035	ENSPREP00000008283	5'-nucleotidase, cytosolic II, like 1.	Ring finger protein 151.	0.647
LOC103476519	LOC103466339	ENSPREP00000029915	ENSPREP00000006144	T cell leukemia homeobox 1.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.642
LOC103476519	LOC103473675	ENSPREP00000029915	ENSPREP00000015035	T cell leukemia homeobox 1.	5'-nucleotidase, cytosolic II, like 1.	0.636
LOC103476519	LOC103478666	ENSPREP00000029915	ENSPREP00000027238	T cell leukemia homeobox 1.	Ring finger protein 41, like.	0.642
LOC103476519	gfi1b	ENSPREP00000029915	ENSPREP00000032060	T cell leukemia homeobox 1.	Growth factor independent 1B transcription repressor.	0.486
LOC103476519	metap2	ENSPREP00000029915	ENSPREP00000033438	T cell leukemia homeobox 1.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.560
LOC103476519	rnf151	ENSPREP00000029915	ENSPREP00000008283	T cell leukemia homeobox 1.	Ring finger protein 151.	0.642
LOC103478666	LOC103466339	ENSPREP00000027238	ENSPREP00000006144	Ring finger protein 41, like.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily.	0.685
LOC103478666	LOC103473675	ENSPREP00000027238	ENSPREP00000015035	Ring finger protein 41, like.	5'-nucleotidase, cytosolic II, like 1.	0.647