STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478861CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b. (283 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
 
 
    0.795
ENSPREP00000001027
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.785
timm23
Mitochondrial import inner membrane translocase subunit TIM23; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
    
 0.686
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.673
timm21
Uncharacterized protein.
    
 0.653
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.646
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.599
polr1c
RNA polymerase I and III subunit C.
    
 0.599
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
   
 0.597
supt5h
Transcription elongation factor SPT5.
    
 0.589
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.