STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM19Transmembrane protein 19. (305 aa)    
Predicted Functional Partners:
rab21
RAB21, member RAS oncogene family.
 
    
 0.605
ENSPREP00000009332
Solute carrier family 30 member 5.
   
  
 0.556
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.533
dhdds
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.533
scarf1
Scavenger receptor class F, member 1.
      
 0.473
saal1
Serum amyloid A-like 1.
      
 0.470
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.470
ENSPREP00000021150
Fin bud initiation factor a.
      
 0.469
rundc3a
RUN domain containing 3Aa.
      
 0.468
ENSPREP00000034000
RUN domain-containing protein.
      
 0.468
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.