STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103481238Synaptotagmin Vb. (424 aa)    
Predicted Functional Partners:
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.898
ENSPREP00000009573
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.826
ENSPREP00000004746
V-SNARE coiled-coil homology domain-containing protein.
   
 0.764
LOC103472839
Vesicle-associated membrane protein 1.
   
 0.695
ENSPREP00000002501
Vesicle-associated membrane protein 2.
   
 0.695
ENSPREP00000016345
Zgc:92912.
   
 0.695
LOC103472703
EF-hand domain-containing protein.
    
 
 0.665
LOC103470421
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.628
syt4
Synaptotagmin IV.
   
0.623
LOC103462615
C2 domain-containing protein.
   
0.623
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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