STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478878Spalt-like transcription factor 2. (1251 aa)    
Predicted Functional Partners:
abcb6
ATP-binding cassette, sub-family B (MDR/TAP), member 6a.
      
 0.640
ENSPREP00000030322
Uncharacterized protein.
      
 0.550
bsx
Brain-specific homeobox.
   
 0.533
wdr73
WD repeat domain 73.
    
  0.507
rbbp4
Retinoblastoma binding protein 4.
    
  0.507
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
  0.507
smoc1
SPARC related modular calcium binding 1.
      
 0.474
ENSPREP00000018784
Uncharacterized protein.
    
  0.425
tnrc6b
Si:dkey-46g23.1.
  
 
 
 0.422
LOC103463694
GATA zinc finger domain containing 2Ab.
    
  0.420
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.