STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp20Ubiquitin carboxyl-terminal hydrolase. (975 aa)    
Predicted Functional Partners:
Map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 
 0.687
CTDSP1
CTD small phosphatase 1.
   
  
 0.683
ENSPREP00000029273
Adrenoceptor beta 2, surface a.
    
 0.656
adrb1
Adrenoceptor beta 1.
    
 0.656
ENSPREP00000010642
Uncharacterized protein.
    
 0.609
ccp110
Uncharacterized protein.
    
 0.609
lap3
Leucine aminopeptidase 3.
    
 0.598
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.583
rfc5
Replication factor C (activator 1) 5.
    
 0.577
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.544
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.