STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461949Glypican 6a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (560 aa)    
Predicted Functional Partners:
LOC103478412
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.590
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.546
hs2st1
Heparan sulfate 2-O-sulfotransferase 1a.
     
 0.525
LOC103463968
Heparan sulfate 2-O-sulfotransferase 1b.
     
 0.525
LOC103471472
Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).
     
 0.523
notum
Uncharacterized protein.
    
 0.518
LOC103464810
Notum pectinacetylesterase 2.
    
 0.518
LOC103468852
Notum, palmitoleoyl-protein carboxylesterase a.
    
 0.518
ndst1
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a.
    
 0.507
ndst2
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a.
    
 0.507
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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