STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474544Zgc:153372. (364 aa)    
Predicted Functional Partners:
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 0.747
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 0.717
sc5d
Sterol-C5-desaturase; Belongs to the sterol desaturase family.
   
 
 0.698
lss
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 
 0.652
ERG28
Ergosterol biosynthesis 28 homolog.
    
 
 0.639
mrps5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.620
eif2s3
Eukaryotic translation initiation factor 2, subunit 3 gamma.
   
 0.614
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.602
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.595
rictor
RPTOR independent companion of MTOR, complex 2 a.
    
 0.565
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.