STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
homezHomeobox and leucine zipper encoding a. (657 aa)    
Predicted Functional Partners:
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.754
LOC103470404
Cardiomyopathy associated 5.
    
 0.661
smg6
SMG6 nonsense mediated mRNA decay factor.
    
 
 0.646
trappc12
Trafficking protein particle complex 12.
      
 0.643
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.633
myrf
Myelin regulatory factor.
      
 0.525
SCML2
Scm polycomb group protein like 2.
    
 0.485
LOC103462030
Scm polycomb group protein like 2.
    
 0.485
LOC103481567
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
   
 0.460
kctd5
Potassium channel tetramerization domain containing 5a.
      
 0.452
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.