STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mesdMesoderm development LRP chaperone. (217 aa)    
Predicted Functional Partners:
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
   
 
 0.561
ostm1
Osteoclastogenesis associated transmembrane protein 1.
   
  
 0.483
ablim2
Actin binding LIM protein family, member 2.
      
 0.476
lrp5
Low density lipoprotein receptor-related protein 5.
    
 
 0.473
Lrp6
LDL receptor related protein 6.
    
 
 0.473
ENSPREP00000027584
Low density lipoprotein receptor-related protein 6.
    
 
 0.473
tecpr2
Tectonin beta-propeller repeat containing 2.
      
 0.441
TMC1
Transmembrane channel-like protein.
    
 
 0.424
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.