LOC103481258 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103481258

Uncharacterized protein. (228 aa)

Predicted Functional Partners:

pik3c3

0.965

LOC103474679

0.948

RABGEF1

0.948

LOC103470250

0.948

appl1

0.858

appl2

0.858

rbsn

0.849

rabep1

0.807

gak

0.762

vps45

0.746

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103470250	LOC103474679	ENSPREP00000030738	ENSPREP00000002413	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.596
LOC103470250	LOC103481258	ENSPREP00000030738	ENSPREP00000032734	Uncharacterized protein.	Uncharacterized protein.	0.948
LOC103470250	RABGEF1	ENSPREP00000030738	ENSPREP00000008918	Uncharacterized protein.	RAB guanine nucleotide exchange factor 1.	0.597
LOC103470250	rabep1	ENSPREP00000030738	ENSPREP00000021547	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
LOC103470250	rbsn	ENSPREP00000030738	ENSPREP00000024815	Uncharacterized protein.	Rabenosyn, RAB effector.	0.649
LOC103470250	vps45	ENSPREP00000030738	ENSPREP00000024249	Uncharacterized protein.	Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.	0.575
LOC103474679	LOC103470250	ENSPREP00000002413	ENSPREP00000030738	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.596
LOC103474679	LOC103481258	ENSPREP00000002413	ENSPREP00000032734	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.948
LOC103474679	RABGEF1	ENSPREP00000002413	ENSPREP00000008918	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor 1.	0.581
LOC103474679	rabep1	ENSPREP00000002413	ENSPREP00000021547	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabaptin, RAB GTPase binding effector protein 1.	0.999
LOC103474679	rbsn	ENSPREP00000002413	ENSPREP00000024815	RAB guanine nucleotide exchange factor (GEF) 1, like.	Rabenosyn, RAB effector.	0.649
LOC103474679	vps45	ENSPREP00000002413	ENSPREP00000024249	RAB guanine nucleotide exchange factor (GEF) 1, like.	Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.	0.575
LOC103481258	LOC103470250	ENSPREP00000032734	ENSPREP00000030738	Uncharacterized protein.	Uncharacterized protein.	0.948
LOC103481258	LOC103474679	ENSPREP00000032734	ENSPREP00000002413	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.948
LOC103481258	RABGEF1	ENSPREP00000032734	ENSPREP00000008918	Uncharacterized protein.	RAB guanine nucleotide exchange factor 1.	0.948
LOC103481258	appl1	ENSPREP00000032734	ENSPREP00000001415	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.858
LOC103481258	appl2	ENSPREP00000032734	ENSPREP00000027453	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.858
LOC103481258	gak	ENSPREP00000032734	ENSPREP00000012671	Uncharacterized protein.	Cyclin G associated kinase.	0.762
LOC103481258	pik3c3	ENSPREP00000032734	ENSPREP00000005530	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.965
LOC103481258	rabep1	ENSPREP00000032734	ENSPREP00000021547	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.807