STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465551Si:dkey-13a21.4. (204 aa)    
Predicted Functional Partners:
tbc1d17
TBC1 domain family, member 17.
     
 0.929
RAB7A
RAB7A, member RAS oncogene family.
  
 
0.928
LOC103465062
RAB7a, member RAS oncogene family.
  
 
0.928
fyco1
FYVE and coiled-coil domain containing 1a.
     
 0.901
LOC103479840
FYVE and coiled-coil domain containing 1b.
     
 0.901
DYNC1I1
Dynein cytoplasmic 1 intermediate chain 1.
     
  0.804
LOC103458526
Dynein, cytoplasmic 1, intermediate chain 2a.
     
  0.804
LOC103479324
Dynein, cytoplasmic 1, intermediate chain 2b.
     
  0.804
Dync1h1
Dynein_C domain-containing protein.
     
  0.803
DYNC2H1
Dynein cytoplasmic 2 heavy chain 1.
     
  0.803
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.