LOC103467311 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103467311

Prostaglandin E synthase 3a (cytosolic). (172 aa)

Predicted Functional Partners:

stip1

0.938

ppp5c

0.935

hsp90ab1

0.902

LOC103457917

0.902

HSP90AA1

0.902

ppid

0.885

LOC103471211

0.883

NR3C1

0.883

Ppig

0.874

nktr

0.874

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HSP90AA1	LOC103467311	ENSPREP00000020973	ENSPREP00000032865	Heat shock protein 90 alpha family class A member 1.	Prostaglandin E synthase 3a (cytosolic).	0.902
HSP90AA1	LOC103471211	ENSPREP00000020973	ENSPREP00000006730	Heat shock protein 90 alpha family class A member 1.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.782
HSP90AA1	NR3C1	ENSPREP00000020973	ENSPREP00000008177	Heat shock protein 90 alpha family class A member 1.	Nuclear receptor subfamily 3 group C member 1.	0.782
HSP90AA1	Ppig	ENSPREP00000020973	ENSPREP00000004884	Heat shock protein 90 alpha family class A member 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.826
HSP90AA1	hsp90ab1	ENSPREP00000020973	ENSPREP00000012481	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.410
HSP90AA1	nktr	ENSPREP00000020973	ENSPREP00000030666	Heat shock protein 90 alpha family class A member 1.	Natural killer cell triggering receptor.	0.826
HSP90AA1	ppid	ENSPREP00000020973	ENSPREP00000011612	Heat shock protein 90 alpha family class A member 1.	Peptidylprolyl isomerase D.	0.865
HSP90AA1	ppp5c	ENSPREP00000020973	ENSPREP00000027168	Heat shock protein 90 alpha family class A member 1.	Serine/threonine-protein phosphatase.	0.932
HSP90AA1	stip1	ENSPREP00000020973	ENSPREP00000008322	Heat shock protein 90 alpha family class A member 1.	Stress-induced phosphoprotein 1.	0.974
LOC103457917	LOC103467311	ENSPREP00000020946	ENSPREP00000032865	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Prostaglandin E synthase 3a (cytosolic).	0.902
LOC103457917	LOC103471211	ENSPREP00000020946	ENSPREP00000006730	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.782
LOC103457917	NR3C1	ENSPREP00000020946	ENSPREP00000008177	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Nuclear receptor subfamily 3 group C member 1.	0.782
LOC103457917	Ppig	ENSPREP00000020946	ENSPREP00000004884	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.826
LOC103457917	hsp90ab1	ENSPREP00000020946	ENSPREP00000012481	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.938
LOC103457917	nktr	ENSPREP00000020946	ENSPREP00000030666	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Natural killer cell triggering receptor.	0.826
LOC103457917	ppid	ENSPREP00000020946	ENSPREP00000011612	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Peptidylprolyl isomerase D.	0.865
LOC103457917	ppp5c	ENSPREP00000020946	ENSPREP00000027168	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Serine/threonine-protein phosphatase.	0.932
LOC103457917	stip1	ENSPREP00000020946	ENSPREP00000008322	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Stress-induced phosphoprotein 1.	0.974
LOC103467311	HSP90AA1	ENSPREP00000032865	ENSPREP00000020973	Prostaglandin E synthase 3a (cytosolic).	Heat shock protein 90 alpha family class A member 1.	0.902
LOC103467311	LOC103457917	ENSPREP00000032865	ENSPREP00000020946	Prostaglandin E synthase 3a (cytosolic).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.902