STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc102aCoiled-coil domain containing 102A. (560 aa)    
Predicted Functional Partners:
ktn1
Kinectin 1.
      
 0.549
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
      
 0.543
LOC103457067
Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1.
   
 
 0.535
LOC103479878
Epidermal growth factor receptor pathway substrate 15 like 1.
      
 0.525
LOC103464192
Uncharacterized protein.
      
 0.525
Sugct
Succinyl-CoA:glutarate-CoA transferase.
      
 0.474
metrn
Meteorin, glial cell differentiation regulator.
      
 0.473
ENSPREP00000032333
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
      
 0.467
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.