STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478908Kruppel-like factor 17. (453 aa)    
Predicted Functional Partners:
LOC103473609
POU domain protein.
    
 0.732
ENSPREP00000028065
Forkhead box A3.
    
 0.569
ESRRB
Estrogen-related receptor beta.
    
 0.493
myc
Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.
   
 
 0.490
LOC103480979
Uncharacterized protein.
   
  
 0.481
Phlda2
Pleckstrin homology-like domain, family A, member 2.
      
 0.477
LOC103482486
Homeobox domain-containing protein.
    
 
 0.475
LOC103465147
Si:ch1073-335m2.2.
    
 
 0.474
spen
Spen family transcriptional repressor.
    
 
 0.474
sox3
SRY-box transcription factor 3.
    
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.