STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000033142Endo/exonuclease/phosphatase domain-containing protein. (411 aa)    
Predicted Functional Partners:
rag2
Recombination activating gene 2.
   
 0.880
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.681
rpl21
Ribosomal protein L21.
   
 
 0.568
ENSPREP00000014193
Reverse transcriptase domain-containing protein.
 
     0.530
bard1
BRCA1 associated RING domain 1.
    
 0.522
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.520
babam1
BRISC and BRCA1 A complex member 1.
    
 0.513
rpl8
Ribosomal protein L8.
   
 
 0.505
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.502
rpl39
Ribosomal protein L39.
   
   0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.