ENSPREP00000033205 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000033205

CARD domain-containing protein. (80 aa)

Predicted Functional Partners:

apaf1

0.694

appl1

0.629

appl2

0.629

LOC103470686

0.613

Birc6

0.613

ENSPREP00000003758

0.530

ENSPREP00000003810

0.530

LOC103477730

0.530

mib2

0.528

cenpn

0.485

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Birc6	ENSPREP00000033205	ENSPREP00000027146	ENSPREP00000033205	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CARD domain-containing protein.	0.613
Birc6	apaf1	ENSPREP00000027146	ENSPREP00000001466	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Apoptotic peptidase activating factor 1.	0.833
Birc6	appl1	ENSPREP00000027146	ENSPREP00000001415	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.528
Birc6	appl2	ENSPREP00000027146	ENSPREP00000027453	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.528
Birc6	mib2	ENSPREP00000027146	ENSPREP00000014990	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.727
ENSPREP00000003758	ENSPREP00000033205	ENSPREP00000003758	ENSPREP00000033205	Pyrin domain-containing protein.	CARD domain-containing protein.	0.530
ENSPREP00000003758	LOC103470686	ENSPREP00000003758	ENSPREP00000019387	Pyrin domain-containing protein.	Interleukin-1.	0.619
ENSPREP00000003810	ENSPREP00000033205	ENSPREP00000003810	ENSPREP00000033205	Uncharacterized protein.	CARD domain-containing protein.	0.530
ENSPREP00000003810	LOC103470686	ENSPREP00000003810	ENSPREP00000019387	Uncharacterized protein.	Interleukin-1.	0.675
ENSPREP00000003810	LOC103477730	ENSPREP00000003810	ENSPREP00000003858	Uncharacterized protein.	Uncharacterized protein.	0.571
ENSPREP00000033205	Birc6	ENSPREP00000033205	ENSPREP00000027146	CARD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.613
ENSPREP00000033205	ENSPREP00000003758	ENSPREP00000033205	ENSPREP00000003758	CARD domain-containing protein.	Pyrin domain-containing protein.	0.530
ENSPREP00000033205	ENSPREP00000003810	ENSPREP00000033205	ENSPREP00000003810	CARD domain-containing protein.	Uncharacterized protein.	0.530
ENSPREP00000033205	LOC103470686	ENSPREP00000033205	ENSPREP00000019387	CARD domain-containing protein.	Interleukin-1.	0.613
ENSPREP00000033205	LOC103477730	ENSPREP00000033205	ENSPREP00000003858	CARD domain-containing protein.	Uncharacterized protein.	0.530
ENSPREP00000033205	apaf1	ENSPREP00000033205	ENSPREP00000001466	CARD domain-containing protein.	Apoptotic peptidase activating factor 1.	0.694
ENSPREP00000033205	appl1	ENSPREP00000033205	ENSPREP00000001415	CARD domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.629
ENSPREP00000033205	appl2	ENSPREP00000033205	ENSPREP00000027453	CARD domain-containing protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.629
ENSPREP00000033205	cenpn	ENSPREP00000033205	ENSPREP00000019437	CARD domain-containing protein.	Centromere protein N.	0.485
ENSPREP00000033205	mib2	ENSPREP00000033205	ENSPREP00000014990	CARD domain-containing protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.528