STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pawrPRKC, apoptosis, WT1, regulator. (280 aa)    
Predicted Functional Partners:
ufl1
UFM1-specific ligase 1.
      
 0.549
mrpl11
Mitochondrial ribosomal protein L11.
      
 0.549
ptpn5
Protein tyrosine phosphatase non-receptor type 5.
      
 0.549
fancc
FA complementation group C.
      
 0.536
cchcr1
Si:dkeyp-20g2.1.
      
 0.483
akap10
A kinase (PRKA) anchor protein 10.
   
  
 0.455
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
      
 0.437
frzb
Frizzled related protein.
      
 0.431
ENSPREP00000001234
Vesicle-associated membrane protein 4.
      
 0.414
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.