STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg7SPG7 matrix AAA peptidase subunit, paraplegin. (819 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.913
ENSPREP00000006614
Prohibitin.
   
 0.843
phb2
Prohibitin.
   
 0.843
pmpca
Peptidase (mitochondrial processing) alpha.
  
 0.786
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.785
afg3l2
AFG3-like AAA ATPase 2.
  
 
0.761
ENSPREP00000018554
AAA domain-containing protein.
  
 
0.760
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.759
LOC103465653
Si:ch1073-174d20.2; Belongs to the AAA ATPase family.
  
 
0.756
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.746
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.