STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459300FYVE, RhoGEF and PH domain containing 6. (1171 aa)    
Predicted Functional Partners:
micu2
Mitochondrial calcium uptake 2.
   
 0.483
micu1
Mitochondrial calcium uptake 1.
   
 0.483
LOC103468189
Single-pass membrane protein with aspartate-rich tail 1b.
     
 0.476
LOC103468431
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.476
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
   
 
 0.469
mcu
Mitochondrial calcium uniporter.
   
 
 0.469
LOC103475719
Ras-related GTP binding A.
    
 
 0.403
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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