STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103470856Uncharacterized protein. (540 aa)    
Predicted Functional Partners:
LOC103480306
RRM domain-containing protein.
   
 0.682
LOC103473466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.681
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.681
LOC103463156
RRM domain-containing protein.
  
 0.678
ENSPREP00000027744
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.641
LOC103461136
Uncharacterized protein.
  
0.630
ptbp1
Polypyrimidine tract binding protein 1a.
   
0.609
ptbp2
Polypyrimidine tract binding protein 2b.
   
0.609
PTBP3
Polypyrimidine tract binding protein 3.
   
0.609
ewsr1
EWS RNA-binding protein 1b.
   
 0.597
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.