STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fxr1Fragile X mental retardation, autosomal homolog 1. (571 aa)    
Predicted Functional Partners:
LOC103470899
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 
 0.747
dnajc19
DnaJ (Hsp40) homolog, subfamily C, member 19.
      
 0.643
tdrd3
Tudor domain containing 3.
    
 
 0.639
atp11b
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
  
 0.630
fkbp2
Peptidylprolyl isomerase.
      
 0.628
Sox2
SRY-box transcription factor 2.
      
 0.597
LOC103463911
Cytoplasmic FMR1 interacting protein 1.
    
 
 0.590
ttc14
Tetratricopeptide repeat domain 14.
 
 
 0.578
LOC103461055
Fragile X mental retardation 1.
  
 
 
0.566
fmr1
Fragile X mental retardation 1.
  
 
 
0.557
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.