slc1a5 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slc1a5

Amino acid transporter. (536 aa)

Predicted Functional Partners:

slc3a2

0.674

slc7a7

0.618

slc7a5

0.534

mtr

0.462

rhoh

0.424

rhoq

0.424

foxa2

0.408

LOC103474899

0.404

ENSPREP00000004746

0.403

lamtor1

0.402

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004746	lamtor1	ENSPREP00000004746	ENSPREP00000028765	V-SNARE coiled-coil homology domain-containing protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.521
ENSPREP00000004746	rhoh	ENSPREP00000004746	ENSPREP00000011426	V-SNARE coiled-coil homology domain-containing protein.	Ras homolog family member H.	0.541
ENSPREP00000004746	rhoq	ENSPREP00000004746	ENSPREP00000016017	V-SNARE coiled-coil homology domain-containing protein.	Ras homolog family member Q.	0.541
ENSPREP00000004746	slc1a5	ENSPREP00000004746	ENSPREP00000033698	V-SNARE coiled-coil homology domain-containing protein.	Amino acid transporter.	0.403
LOC103474899	slc1a5	ENSPREP00000014192	ENSPREP00000033698	Solute carrier family 43 member 2a.	Amino acid transporter.	0.404
foxa2	slc1a5	ENSPREP00000001214	ENSPREP00000033698	Forkhead box A2.	Amino acid transporter.	0.408
lamtor1	ENSPREP00000004746	ENSPREP00000028765	ENSPREP00000004746	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	V-SNARE coiled-coil homology domain-containing protein.	0.521
lamtor1	rhoh	ENSPREP00000028765	ENSPREP00000011426	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras homolog family member H.	0.595
lamtor1	rhoq	ENSPREP00000028765	ENSPREP00000016017	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Ras homolog family member Q.	0.595
lamtor1	slc1a5	ENSPREP00000028765	ENSPREP00000033698	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	Amino acid transporter.	0.402
mtr	rhoh	ENSPREP00000003676	ENSPREP00000011426	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Ras homolog family member H.	0.508
mtr	rhoq	ENSPREP00000003676	ENSPREP00000016017	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Ras homolog family member Q.	0.508
mtr	slc1a5	ENSPREP00000003676	ENSPREP00000033698	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Amino acid transporter.	0.462
rhoh	ENSPREP00000004746	ENSPREP00000011426	ENSPREP00000004746	Ras homolog family member H.	V-SNARE coiled-coil homology domain-containing protein.	0.541
rhoh	lamtor1	ENSPREP00000011426	ENSPREP00000028765	Ras homolog family member H.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.595
rhoh	mtr	ENSPREP00000011426	ENSPREP00000003676	Ras homolog family member H.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.508
rhoh	slc1a5	ENSPREP00000011426	ENSPREP00000033698	Ras homolog family member H.	Amino acid transporter.	0.424
rhoq	ENSPREP00000004746	ENSPREP00000016017	ENSPREP00000004746	Ras homolog family member Q.	V-SNARE coiled-coil homology domain-containing protein.	0.541
rhoq	lamtor1	ENSPREP00000016017	ENSPREP00000028765	Ras homolog family member Q.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.595
rhoq	mtr	ENSPREP00000016017	ENSPREP00000003676	Ras homolog family member Q.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.508